List of Applications/Science (日本語)

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サイエンス

Note: 最新の科学用アプリケーションについては AUR の 'science' カテゴリをチェックしてください

科学論文

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数学

電卓

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  • bc — 任意精度計算言語。
http://www.gnu.org/software/bc/ || bc
  • calc — 任意精度計算コンソール。
http://www.isthe.com/chongo/tech/comp/calc/ || calc
  • Extcalc — Qt ベースの科学用グラフィカル計算器。
http://extcalc-linux.sourceforge.net/ || extcalcAUR
  • GCalctool — GNOME デスクトップの科学電卓。
http://www.gnome.org || gcalctool
  • KAlgebra — KDE EDU に含まれる計算器と 3D プロッタ。
http://www.kde.org/applications/education/kalgebra/ || kdeedu-kalgebra
  • KCalc — KDE デスクトップの科学電卓。
http://kde.org/applications/utilities/kcalc/ || kdeutils-kcalc
  • Qalculate — 電卓・方程式ソルバ。フォールトトレラントなパース、定数認識とユニット。
http://qalculate.sourceforge.net/ || libqalculate
  • SpeedCrunch — 高速高精度でパワフルなクロスプラットフォームの計算器。
http://speedcrunch.org || speedcrunchAUR
  • xcalc — 代数・逆ポーランド表記法モードを備えた X 用科学電卓。
http://xorg.freedesktop.org/ || xorg-xcalc

数式処理システム

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  • Fermat — 長整数・小数、複数の変数を含む多項式、記号計算、多項式環の行列、グラフ、その他多くの計算ができる数式処理システム。
http://home.bway.net/lewis/ || fermatAUR
  • Mathomatic — C で書かれた多目的の数式処理システム。
http://www.mathomatic.org/math/ || mathomatic
  • Maxima — wxWidgets ベースのフロントエンドを持った Maple/Mathematica-ライクなプログラム。
http://maxima.sourceforge.net/ || maxima wxmaxima
  • PARI/GP — 整数論の高速計算のために作られた数式処理システム。
http://pari.math.u-bordeaux.fr/ || pari
  • Sage — Python で書かれた Maxima に似た数式処理システム。
http://www.sagemath.org/ || sage-mathematics
  • Xcas — フリーの、基礎的な数式処理システムである、Giac のユーザーインターフェース。
http://www-fourier.ujf-grenoble.fr/~parisse/giac.html || xcasAUR

科学技術計算

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  • EngLab — A cross-compile mathematical platform with a C like syntax.
http://englab.bugfest.net || englabAUR
  • Euler — A numerical application designed for higher level math such as calculus, optimization, and statistics that uses Maxima for symbolic operations.
http://euler.sourceforge.net || eulerAUR
  • FreeMat — A Matlab-like program that supports many of its functions and features a codeless interface to external C, C++, and Fortran code, further parallel distributed algorithm development (via MPI), and 3D visualization capabilities.
http://freemat.sourceforge.net/ || freemat
  • Octave — A Matlab-like language and interface for numerical computations.
http://www.gnu.org/software/octave/ || octave
  • PyLab — A collection of Python modules (pyplot, numpy, etc.) used for scientific calculations.
http://www.scipy.org/PyLab || python2-matplotlib
  • Scilab — A Matlab alternative used for numerical computations, its syntax is not equivalent to that of Matlab, but it can be easily converted.
http://www.scilab.org/ || scilabAUR

統計学

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  • JAGS (Just another Gibbs sampler) — A cross-platform program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation.
http://mcmc-jags.sourceforge.net/ || jagsAUR
  • PSPP — A free SPSS implementation.
http://www.gnu.org/software/pspp/ || psppAUR
  • R — A software environment for statistical computing and graphics.
http://cran.r-project.org/ || r
  • RKWard — A frontend for the statistical language R.
http://rkward.sourceforge.net/ || rkwardAUR

データ評価

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  • Extrema — A visualization and data analysis tool.
http://sourceforge.net/projects/extrema || extremaAUR
  • Fityk — A curve fitting and data analysis application, predominantly used to fit analytical, bell-shaped functions to experimental data.
http://www.unipress.waw.pl/fityk/ || fitykAUR
  • Gnuplot — A command-line program that can generate 2D and 3D plots of functions, data, and data fits.
http://www.gnuplot.info/ || gnuplot
  • Grace — A WYSIWYG 2D graph plotting tool.
http://plasma-gate.weizmann.ac.il/Grace/ || grace qtgraceAUR gracegtkAUR
  • LabPlot — A free software data analysis and visualization application, similar to SciDAVis.
http://labplot.sourceforge.net/ || labplot2AUR
  • QtiPlot — A platform-independent application used for interactive scientific graphing and data analysis, similar to the proprietary Origin or SigmaPlot.
http://soft.proindependent.com/qtiplot.html || qtiplot
  • ROOT — A data analysis program and library (originally for particle physics) developed by CERN.
http://root.cern.ch/drupal/ || rootAUR
  • SciDAVis — A fork of QtiPlot with the goal of being better documented and more user friendly.
http://scidavis.sourceforge.net/ || scidavisAUR

See also List of Applications#Spreadsheets

化学・生物学

計算生物学とバイオインフォマティクス

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  • BALL (Biochemical Algorithms Library) — An application framework in C++ that provides an extensive set of data structures as well as classes for molecular nechanics, advanced solvation methods, comparison and analysis of protein structures, file import/export, and visualization.
http://www.ball-project.org/ || ballAUR
  • BioJava — A set of Java tools for computational biology, as well as bioinformatics.
http://biojava.org/wiki/Main_Page || biojavaAUR
  • Biopython — A Python package with tools for computational biology, as well as bioinformatics.
http://biopython.org/wiki/Biopython || biopythonAUR
  • EMBOSS (European Molecular Biology Open Software Suite) — An open source software analysis package specially developed for the needs of the molecular biology and bioinformatics user community.
http://emboss.sourceforge.net/ || embossAUR
  • MEGA (Molecular Evolutionary Genetics Analysis) — An integrated tool for conducting automatic and manual sequence alignment, inferring phylogenetic trees, mining web-based databases, estimating rates of molecular evolution, inferring ancestral sequences, and testing evolutionary hypotheses.
http://www.megasoftware.net/ || megaAUR
  • MUMmer — A bioinformatics software system for sequence alignment based on suffix trees.
http://mummer.sourceforge.net/ || mummerAUR
  • UGENE — An application that integrates dozens of well-known biological tools and algorithms, providing both graphical user and command-line interfaces.
http://ugene.unipro.ru/ || ugeneAUR

分子構造ビューア

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  • Avogadro — An editor, viewer and simulator for 3D molecule structures (also supports downloading files from the Protein Data Bank).
http://avogadro.openmolecules.net/wiki/Main_Page || avogadro
  • BALLView — A standalone molecular modeling and visualization application, part of the BALL framework.
http://www.ballview.org/ || ballAUR
  • Ghemical — A computational chemistry software package used to edit, view and simulate molecular structures.
http://bioinformatics.org/ghemical/ghemical/index.html || ghemical
  • PyMOL — An open-source molecular visualization system that can produce high quality 3D images of small molecules and biological macromolecules, such as proteins.
http://pymol.sourceforge.net/ || pymolAUR
  • RasMol — A computer program written for molecular graphics visualization intended and used primarily for the depiction and exploration of biological macromolecule structures.
http://www.rasmol.org/ || rasmolAUR

分子構造ドローイング

  • BKChem — A practical and goodlooking skeletal formula molecule drawing program.
http://bkchem.zirael.org/ || bkchemAUR
  • Chemtool — A GTK+-based program for drawing chemical structural formulas.
http://ruby.chemie.uni-freiburg.de/~martin/chemtool/chemtool.html || chemtool
  • EasyChem — A simple skeletal formula molecule drawing program with a focus on producing press-quality figures.
http://easychem.sourceforge.net/ || easychemAUR
http://gabedit.sourceforge.net/ || gabeditAUR
  • XDrawChem — An extensive skeletal formula molecule drawing program (includes spectroscopy prediction).
http://xdrawchem.sourceforge.net/ || xdrawchemAUR

周期表

  • gElemental — A periodic table of the elements with additional information.
http://freshmeat.net/projects/gelemental || gelementalAUR
  • Kalzium — A periodic table of the elements with molecule editor and equation solver from the KDE desktop.
http://edu.kde.org/kalzium/ || kdeedu-kalzium

生化学

  • Bioclipse — A Java-based visual platform for biochemestry that uses the Eclipse Rich Client Platform (RCP).
http://www.bioclipse.net/ || not packaged? search in AUR

分子モデリング

  • GROMACS (GROningen MAchine for Chemical Simulations) — A versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.
http://www.gromacs.org || gromacsAUR
  • Quantum ESPRESSO — An integrated suite of applications for electronic-structure calculations and materials modeling at nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials (both norm-conserving and ultrasoft).
http://www.quantum-espresso.org/ || quantum-espressoAUR

画像処理

  • ImageJ — プラグインやマクロによる拡張ができる Java ベースのイメージプロセシング・分析プログラム。顕微鏡検査で広く使われています (例: 細胞を数える)。
http://rsb.info.nih.gov/ij || imagejAUR

天文学

  • Celestia — A 3D astronomy simulation program that allows users to travel through an extensive universe, modeled after reality, at any speed, in any direction and at any time in history.
http://www.shatters.net/celestia/ || celestia
  • GIMP Astronomy Plugins — A set of GIMP plugins for astronomical image processing.
http://hennigbuam.de/georg/gimp.html || gimp-plugin-astronomyAUR
  • GoQat — A camera acquisition software, especially for QSI cameras, that provides other features such as autoguiding, focusing help and others.
http://canburytech.net/GoQat/ || goqatAUR
  • KStars — A planetarium application that provides an accurate graphical simulation of the night sky, from any location on Earth, at any date and time. It is included in KDE Edu.
http://edu.kde.org/kstars/ || kdeedu-kstars
  • Open PHD Guiding — A telescope autoguiding software based on the famous PHD Guiding.
http://code.google.com/p/open-phd-guiding/ || open-phd-guidingAUR
  • Qastrocam-g2 — A webcam acquisition software for planetary imaging.
http://sourceforge.net/projects/qastrocam-g2/ || qastrocam-g2AUR
  • Skychart / Cartes du Ciel — A planetarium that maps out and labels most of the constellations, planets, and objects you can see with a telescope. It can also download Digitized Sky Survey Charts and superimpose images over these charts.
http://www.ap-i.net/skychart/start/ || skychartAUR
  • StarPlot — A 3-dimensional star chart viewer.
http://starplot.org/ || starplotAUR
  • Stellarium — A beautiful 3D planetarium that uses OpenGL to render a realistic sky in real time.
http://www.stellarium.org/ || stellarium
  • XEphem — A Motif-based ephemeris and planetarium program.
http://www.clearskyinstitute.com/xephem/xephem.html || xephemAUR

物理学

電子工学

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  • gEDA — A full suite and toolkit of Electronic Design Automation tools that are used for electrical circuit design, schematic capture, simulation, prototyping, and production.
http://www.geda-project.org/ || geda-gaf
  • KiCAD — A software suite for electronic design automation (EDA) that facilitates the design of schematics for electronic circuits and their conversion to PCB (printed circuit board).
http://www.kicad-pcb.org/display/KICAD/KiCad+EDA+Software+Suite || kicad
  • KLogic — An application used for easily building and simulating digital circuits.
http://www.a-rostin.de/ || klogicAUR
  • KTechLab — An IDE for electronic and PIC microcontroller circuit design and simulation featuring an extensive circuit designer with autorouting and simulation of all common electronic components and logic elements.
http://sourceforge.net/projects/ktechlab/ || ktechlab
  • Oregano — A graphical software application for schematic capture and simulation of electrical circuits. The actual simulation is done by the ngspice or Gnucap engines.
https://github.com/marc-lorber/oregano || oreganoAUR
  • QElectroTech — An application used to draw advanced electrical circuits.
http://qelectrotech.org/ || qelectrotechAUR
  • Qucs — An electronics circuit simulator application that gives you the ability to set up a circuit with a graphical user interface and simulate its large-signal, small-signal and noise behaviour.
http://qucs.sourceforge.net/ || qucs

物理シミュレーション

  • Code_Aster — 土木工学や構造力学における有限要素解析や数値シミュレーションのためのソフトウェアパッケージ。
http://www.code-aster.org || asterAUR
  • Step — KDE デスクトップに KDE Edu の一部として含まれている二次元の物理シミュレーション。
http://edu.kde.org/step/ || kdeedu-step

単位変換

  • ConvertAll — 意味がないものでも様々に単位を組み合わせられる (e.g. inches per decade) 単位変換アプリケーション。
http://convertall.bellz.org/ || convertallAUR
  • Gonvert — 長さ、量、数など多くのカテゴリで CGS・帝国単位・古代単位など多くの単位系間で変換できる変換ユーティリティ。
http://www.unihedron.com/projects/gonvert/ || gonvertAUR
  • Units — コマンドライン単位コンバーター・電卓。倍数的なスケール変化、ノンリニアな変換ができる。華氏を摂氏やゲージなどに変換するなど。
http://www.gnu.org/s/units/ || units